Seung Kim

ValueError (ill-defined empirical covariance)

2

Thank you for the wonderful package to analyse CITE-seq. I'm having an error while running dsb and below is the code and error message: `pt.pp.dsb(filtered, raw, empty_counts_range=(2, 3), random_state=1)` Having...

OverflowError while running ir.pp.ir_dist

4

### Report Dear grst, I'm having below error while running ir.pp.ir_dist. ### code ``` ir.pp.ir_dist( mdata, metric="tcrdist", sequence="aa", cutoff=15, airr_mod = "airr" ) ``` ### error message ``` --------------------------------------------------------------------------- OverflowError...

Hi, I run souporcell and two samples have shared so I run shared_sample.py. However, all loss values are zero. Do you have any idea what went wrong? ``` locus1 matchset...

Hi, I'm running souporcell from conda environment and having this error while running clustering. My code ``` souporcell/souporcell_pipeline.py -i /users/data/soc/Pool/sample_alignments.bam -b /users/data/soc/Pool/barcodes.tsv -f /projects/references/refdata-gex-GRCh38-2020-A/fasta/genome.fa -t 8 -o /users/data/soc/Pool -k 9...