lyisrae1

bracken is not working with kraken2

1

[Screenshot 2024-03-05 232512](https://github.com/jenniferlu717/Bracken/assets/90928842/2c017fe9-cb57-4ce9-a0ff-d9d1ecfd4285) Hello, I have been trying to use Bracken 2.9, but I keep getting an error message that kills the program. I have made a custom kraken2 database,...

Hello, I am getting an error when using the checkm2 testrun. And when using my own data. This is the error: Traceback (most recent call last): File "/home/yisraell/.conda/envs/checkm2/bin/checkm2", line 267,...

The Bash tutorial is missing a step

1

### User checklist - [x] Are you using the latest release? Yes - [x] Are you using python 3? Yes - [x] Did you check previous issues to see if...

GTDB won't stop running and produce results

7

Hello, May you please help me figure out what is going wrong? I have been trying to use GTDB for the past month, and it does not stop running. It...

Would adding the nt_euk database be possible?

2

Hello, Thank you for the incredibly helpful program. But I had a question about custom databases. I was wondering if it would be possible for users to be able to...