Hello,
I am getting an error when using the checkm2 testrun. And when using my own data. This is the error:
Traceback (most recent call last):
File "/home/yisraell/.conda/envs/checkm2/bin/checkm2", line 267, in
predictor.prediction_wf(False, 'auto', False, False, False)
File "/home/yisraell/.conda/envs/checkm2/lib/python3.6/site-packages/checkm2/predictQuality.py", line 135, in prediction_wf
diamond_out = diamond_search.run(prodigal_files)
File "/home/yisraell/.conda/envs/checkm2/lib/python3.6/site-packages/checkm2/diamond.py", line 119, in run
self.__call_diamond(protein_chunks, diamond_out)
File "/home/yisraell/.conda/envs/checkm2/lib/python3.6/site-packages/checkm2/diamond.py", line 74, in __call_diamond
sequenceClasses.SeqReader().write_fasta(seq_object, temp_diamond_input.name)
File "/home/yisraell/.conda/envs/checkm2/lib/python3.6/site-packages/checkm2/sequenceClasses.py", line 104, in write_fasta
fout.write('>' + seqId + '\n')
UnicodeEncodeError: 'ascii' codec can't encode character '\u03a9' in position 6: ordinal not in range(128)
Can you please tell me what I am doing wrong? Or if something installed incorrectly??
chklovski
