Sarah Lutteropp

> I will have a look but I will wait for the new version to make detailed comments, ok? Okay! I am nearly done with remodeling the text following the...

Thanks! Please check out the newest version of the document on Overleaf before rewriting the simulation part. Quite a lot of things changed since your commented version (I cited the...

I'm not sure you saw the comments @stamatak made in the Overleaf document. I'm directly adding both your and Alexi's comments in red text to the write-up, because it appears...

I disagree with removing the "no arcs blabla present" annotations from the move pictures and moving them to the captions, as this wastes space in the writeup. But I anyway...

FYI: I am prioritizing finishing the remaining sections on the paper draft for now, because @stamatak needs a complete version of the draft Thursday morning.

I copied and pasted the values I added to the paper from your simulation script. The script is here: https://github.com/lutteropp/NetRAX/blob/master/experiments/src/celine_simulator.py > Also, did you change the values by yourself, or...

> we aim for 8 pages, bib included, Only 8 pages? Oh my, I thought a paper has 15 pages... Okay, I will keep the experimental results and discussion as...

@stamatak @celinescornavacca Can we really submit to the Bioinformatics journal? I just saw this in their instructions for authors (https://academic.oup.com/bioinformatics/pages/instructions_for_authors): Original Papers (up to 7 pages; this is approx. 5,000...

>I had assumed that you had read them already. I read them a long time ago (after all, they don't say many memorable things), no idea why I had 15...

Bad news: The only experiment that finished within 24 hours was "10 taxa, 1 reticulation, unpartitioned dataset, LikelihoodModel.AVERAGE". And in this one, it looks like NetRAX inferred a tree all...