Sarah Lutteropp

PhyloNET ML with 2 reticulations max on the 10 taxa 1 reticulation dataset finished its first out of 5 runs on the PhD laptop (it inferred a 2-reticulation network). It...

No more progress on the PhyloNET ML with 2 reticulations max run. I cannot tell if it maybe got stuck in an endless loop or so, it does not print...

Output and inferred network for PhyloNET MP - with max_reticulations = 1: [10t_1r_phylonet_maxret_1_mp_output.txt](https://github.com/lutteropp/NetRAX/files/6993826/10t_1r_phylonet_maxret_1_mp_output.txt) [10t_1r_phylonet_maxret_1_mp_inferred_network.txt](https://github.com/lutteropp/NetRAX/files/6993828/10t_1r_phylonet_maxret_1_mp_inferred_network.txt) - with max_reticulations = 2: [10t_1r_phylonet_maxret_2_mp_output.txt](https://github.com/lutteropp/NetRAX/files/6993839/10t_1r_phylonet_maxret_2_mp_output.txt) [10t_1r_phylonet_maxret_2_mp_inferred_network.txt](https://github.com/lutteropp/NetRAX/files/6993840/10t_1r_phylonet_maxret_2_mp_inferred_network.txt)

And the judge results for PhyloNET MP: [judge_phylonet_mp_maxret_1.txt](https://github.com/lutteropp/NetRAX/files/6993873/judge_phylonet_mp_maxret_1.txt) [judge_phylonet_mp_maxret_2.txt](https://github.com/lutteropp/NetRAX/files/6993872/judge_phylonet_mp_maxret_2.txt)

Just for cross-referencing: The document can be found and edited here: https://www.overleaf.com/8389195984mmncnkcgrfwh I added all comments in red text color, to be removed one-by-one after I went through them/ changed...

Hi Celine, Thank you for your very detailed and helpful comments. There are some comments where I do not understand how to respond to them. The remaining comments are clear...

I have updated my previous message with **My suggested action is** statements, to make it more actionable. Please open the message in the GitHub issue instead of replying to the...

Thank you @celinescornavacca, this helps a lot. Now I know exactly how to proceed! :)

Thanks, I have taken all your comments into account and revised the write-up accordingly.

> Internet was down for 48h! 48 hours? Wow! > Can you send me the overleaf link here? Link to the paper: [https://www.overleaf.com/2575832168cydzfwcpjkvj](https://www.overleaf.com/2575832168cydzfwcpjkvj) Link to the supplement: [https://www.overleaf.com/5323862377sdgjfsqvqscx](https://www.overleaf.com/5323862377sdgjfsqvqscx) @stamatak Already...