luozhy88

Trimmomatic option

8

If I want to do Trimmomatic, I should use "--cleaning " or "--cleaning yes"? "--cleaning: Filters with Trimmomatic (Default: no)" is not clear

Why didn't this tool remove the genomic information of the host, such as human or mouse?

8

1 Why didn't this tool remove the genomic information of the host, such as human or mouse? 2 Why didn't this tool remove common contaminant ?

test.samples is bad

1

How to automatically generate Samples file such as test.samples, if you tell fastq the location of directory. If I edit this tables manually, it will be very troublesome.

install-error-about-

1

HI When I install sunbeam,I get a error.I see the code about it,but I do not know about "-d .git ". The git had been installed before. why?  

how to get some common sequence from different samples for the table?

1

I used the sunbeam,but I have a problem about the result.I want to get some common sequence from different samples for the table. How?

Error in rule

1

What does this mean about "QC_se.fastq.gz"?

Can this function be realized for atlas?

4

Hi,Can this function be realized by atlas? Coassembly mode: Reads from all samples are pooled and a single assembly is performed. Then reads from individual samples are mapped to the...

ClientConnectorError: Cannot connect to host huggingface.co:443 ssl:default [Network is unreachable]

1


Your process runs quite well, would you consider further refining it to incorporate the MaxQuant workflow?

r2r documents create "Processed 0 files successfully."

2

When I used the command "r2r documents create R2R/py/core/examples/data/aristotle.txt," it was not successful. My previous installations were all successful. Could you please help me?