Lukas Forer comments

Results 58 comments of


                                            Lukas Forer

Conda environment reuse

Thanks! I will close this issue. Please refer to issue #231 for further discussions and updates.

Need the ability to skip md5 check for some files in snapshot

I think nft-utils is the best way to implement this logic, so I am closing this issue.

Add test-execution optimization and sharding options

Thanks for the info! We are in the final stage of preparing the new release, along with the preprint.

Caching of setup fixtures' results

Thanks, great idea! I will look into this in the next few weeks 👍

Broken link

Thanks. Where did you find this broken link? The correct location is https://www.nf-test.com/docs/configuration/

Broken link

I couldn’t find the broken link. Please feel free to reopen the issue.

bug: When an input is passed to output with no modification it causes the snapshot to have the absolute path

Hi Adam, thanks, I tried to replicate this issue, but I only see this behaviour if the path of the input file is wrong. I was able to run the...

Only run tests for changed files

Hi all, we have been working for some time now on building a dependency graph between modules, workflows, and test files. This will enable us to calculate test coverage and...

is there a way we can allow for deliberate snapshot matching?

I see. We could extend the mechanism so that ids starting, for example, with '!' could be used multiple times. E.g.: ```groovy assert snapshot(...).match("!common_files") ```

Test file not created for workflow when workflow.onComplete is in main.nf

Hi Pauline, Thank you for reporting this issue in the testcase generation. It affects only the generation itself and has no consequences for the execution of the testcase. Neverless, I...