Lukas Forer

icon indicating a website link http://www.forer.it

icon company Genetic Epidemiology, Innsbruck Medical University icon location Innsbruck, Austria icon location Hello, Iā€™m Lukas Forer, a researcher and software developer living in Austria. I love building scientific applications that are efficient and beautiful.

Results 58 comments of Lukas Forer

Testing config resolution at task level

Good point, thanks for the suggestion! ATM there is no way to check this, but I keep this task on our todo-list šŸ‘

nf-test init should add .nf-test to .gitignore

Thanks, makes sense šŸ‘ I will adapt the init command to update or create `.gitignore`.

Feature request: github ci workflow

There is now a tutorial about running nf-test on GitHub: https://www.nf-test.com/tutorials/github-actions/

How to install from local file?

At the moment, it is possible to install an application from the local filesystem via the `install` command. For example: ``` cloudgene install /path/to/application.zip ``` Moreover, it is possible to...

Complete Documentation

Documentation is currently work in progress. Cloudgene has some mechanisms to integrate pages (like help.ejs) without rebuilding the webapp using grunt. Unfortunately, this feature is not yet documented :( I...

Complete Documentation

At the moment, the footer message is stored in the database. You can change it in the Admin Panel by clicking on `Templates`. There is a key `FOOTER` which contains...

Can't activate multiple jar plugins via --plugins

Hi, sorry for the late reply. You can activate multiple plugins by separating them with a `:` Example: ```bash nf-test test my-test.nf.test --plugins path/to/my/nft-plugin.jar:path/to/my/nft-plugin2.jar ```

Snapshot Transformer

Thanks for your examples! They really help me get a better understanding of what is needed.

Problem running new version of nft-bam: 3.0.0

Thanks. Yes, I know this is not yet super user-friendly. I will try to find a better solution (e.g., downloading the new JSON file when the version is not found...

Run nf-test in stub mode

Thanks, that definitely makes sense to save time and avoid duplicated code. I am currently busy with teaching (end of semester) and trying to release 0.9.0 really soon. But afterwards,...