Lucille Delisle

add 'i' lines in MafIO

12

- [X] I hereby agree to dual licence this and any previous contributions under both the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_. - [X] I have read the...

Add Fiji plugin Max_Inscribed_Circles from BIOP This is WIP because I wait for publication on maven. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR)....

hicCorrect with cool format

1

Hi, when you use the cool format, the correct values are stored in the raw and when you apply the weights you get back to before correction... I think this...

Error in cooler balance when high number of chromsomes

1

Hi, I found a bug in version 0.8.10. Here is a minimal test: ``` echo -e "chr1\t1000\tchr1\t1000" > valid.pairs.txt for i in {1..10000}; do echo -e "chr$i\t50000" >> fake.size done...

get the list of all possible stats

2

Hi, I am wondering if there is a way to get the list of all possible stats described here: https://github.com/deeptools/pyBigWig/blob/705b07495ea78740eb7ea94fb0082e23661d9929/libBigWig/bigWig.h#L99-L107 For example, ``` import pyBigWig possible_stats = pyBigWig.stats_cases possible_stats ['mean',...

FOR CONTRIBUTOR: * [X] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [ ] - License permits unrestricted use (educational +...

Fix #404

Add the vlines and vhighlight. (The vhighlight has been forgotten to the release text of 3.7).

TODO list

15

I put here what I would like to put in pygenometracks. Far future: - BAM track - add the possibility to make background - put the barcolorscale aligned below.

@sansere would like to visualize bedpe files from iMARGI/RADICL etc. data in combination with other sequencing data from independent coordinates and chromosomes at once. For example DNA at chr1 and...