lingliao

sequence to graph mapping didn't work neither

1

I go with the command, minigraph -cx lr graph.gfa query.fa > out.gaf the graph.gfa is generated by the test data provided by authors, MT-chimp.fa and MT-human.fa. then I use the...

Segmentation fault (core dumped) while generaing a genome graph

4

I attached the output while trying to generate a genome graph... Any suggestion would be appreciated! [M::main::0.001*4.79] loaded the graph from "bap1_hg38.fa" [M::mg_index::0.004*1.46] indexed the graph [M::mg_opt_update::0.004*1.46] occ_max1=10; lc_max_occ=2 [M::ggen_map::0.005*1.40]...

Memory and threads suggested - Core dump when building minimizer seeder from the graph

8

Hi, I am trying to align a .fastq file(16GB) to a genome graph(4GB). Could you please suggest me how many memory and threads should be prepared for successful running? Thanks!

Can we add python3 to the docker image _quay.io/biocontainers/graphaligner:1.0.16--hd03093a_1_ please?