lingliao

Thanks for the reply!! I also tried the test files, MT-chimp.fa and MT-human.fa, they also only work when t = 1, minigraph -cxggs -t 1 MT-chimp.fa MT-human.fa > graph_test.gfa My...

I see, that would be weird, we are using in-campus storage1, and sorry I didn't share the data here, I don't have access to download file...

Couldn't install it met the error `g++ -c -o release/obj/src/argparse.o src/argparse.cpp -Wall -Wextra -std=c++2a -Iext/plog/include/ -Iext/GraphAligner/ -Iext/concurrentqueue/ -Iext/parallel_hashmap/ -Wno-unused-parameter -Wno-missing-field-initializers -DNDEBUG -O3 -march=native g++: error: unrecognized command line option ‘-std=c++2a’...

I met the same issue, any suggestion about how to solve the problem will be appreciated!!

I met the same issue "Core dump when building minimizer seeder from the graph"

SURE! Thank you for the quick response!! The graph is downloaded from here https://s3-us-west-2.amazonaws.com/human-pangenomics/pangenomes/freeze/freeze1/minigraph/hprc-v1.0-minigraph-grch38.gfa.gz I unzipped it before aligning.

Sooo nice to hear from you!! Here is my command line, `GraphAligner -g input.gfa -f input.fastq -a out.gaf -x vg`. And I call GraphAligner with docker image `quay.io/biocontainers/graphaligner:1.0.16--hd03093a_1`. Please let...

I will give it a try soon and share a feed back here! Thank you Mikko!!