lgeistlinger
lgeistlinger
I am writing to say that iSEE is just great. I mean really, just great. Great work. Now one question, is there an easy way to `coord_flip` my feature assay...
@lgeistlinger , thank-you for the update! (esp. import). ``` # I used apeglm for the res: res
``` > gbm gbm A MultiAssayExperiment object of 3 listed experiments with user-defined names and respective classes. Containing an ExperimentList class object of length 3: [1] GBM_CNVSNP-20160128: RaggedExperiment with 146852...
For new term requests, please provide the following information: ## Preferred term label Socioeconomic status ## Synonyms class socioeconomic factors ## Textual definition Characteristics of a person such as education...
From the documentation of `?SpatialImage` in the Section "Constructor": ``` If ‘x’ is a string and ‘is.url=TRUE’ or it does not start with a URL-like prefix, a ‘StoredSpatialImage’ is returned....
Hi - I was wondering whether something can be done about `SpatialExperiment`'s quite extensive dependency stack (the [Bioc page](https://www.bioconductor.org/packages/release/bioc/html/SpatialExperiment.html) lists 94 dependencies, which is a lot for a core class...
Hi I was wondering why the `imgData` slot of a `SpatialExperiment` restricts to columns ‘sample_id’, ‘image_id’, ‘data’, ‘scaleFactor’ I can imagine many scenarios where one would might want to annotate...
There are now a number of different representations of spatial imaging data around. I wonder whether `imgData(spe)$data` could also accommodate for lists of eg `EBImage::Image` or `RBioFormats::AnnotatedImage` as opposed to...
In Bioc release: ``` > library(scRNAseq) > sce.seger rowData(sce.seger) DataFrame with 26179 rows and 2 columns symbol refseq SGIP1 SGIP1 NM_032291 AZIN2 AZIN2 NM_052998+NM_001293562 CLIC4 CLIC4 NM_013943 AGBL4 AGBL4 NM_032785...
Hi, I am trying to follow the instructions under https://spark.rstudio.com/graphframes/ for running `graphframes` with spark version `2.1.0`. However, I am facing a similar issue as has been described before in...