lgeistlinger
lgeistlinger
Thanks a lot for taking the time to walk me through that. I'll try that out.
Question 1: Most GSA methods only support two groups comparisons. That means, you'll need to break down multi-group comparisons into the atomic unit of several 2-group comparisons. Question 2: let's...
I think `import` would then need to allow to specify which two groups you would like to compare / for which DE results should be imported. Good point.
Exactly. This is how you could produce an index vector that allows you to subset to the relevant samples for comparison (would make samples in groups 2 and 3 your...
Hi @jorainer! Thanks for contacting me + your interest. Support for exporting to popular downstream viz packages is indeed planned for the April release and I have some rudimentary skeleton...
The references in-text as well as in the References section are not properly formatted, compare to the PDF version.
`echo = FALSE` should translate to `message = FALSE` to prevent printing of package startup messages
Instances such as DAVID (https://david.ncifcrf.gov/) and Pathway Studio (https://www.pathwaystudio.com/) (Section 12.1) and GO (http://www.geneontology.org/) and KEGG (http://www.genome.jp/kegg) (Section 12.3) could be simply links instead of showing the URL in brackets.
In section 12.4 a reference ``` @ref(#sec:ora) ``` seem to not render.
Thanks @jwokaty - sure we can add Rohit as a contributor. Please insert as contributor after Mirko Signorelli and before Marcel Ramos. Thanks for your efforts!