Laura H Spencer

Coerce dataframe into methylBase object

1

I have a dataframe that was extracted from a methylBase object using `getData()` - it retains the same columns as a methylBase object - I'd now like to convert it...

Low fragment number in several 5degC samples

14

I'm analyzing the RNASeq data that I aligned with STAR/featureCounts, and notice that several samples from the 5degC treatment (blue) have many fewer fragments (aligned/assigned to genes). @shedurkin do you...

Ostrea angasi samples

3

I have a bunch of Australian flat oyster (_Ostrea angasi_) tissue in the -80 and in RNA later, with no current plans for them. Tissues include gonad, mantle, and ctenidium....

Download Pacific cod data to Roberts Lab Server

10

Azenta WGS is complete for the Pacific cod marine heatwave genetics project and pilot ecotype project. I'm downloading to NOAA server now. I can also download it to a Roberts...

Get quote for Pcod lcWGS

1

Previous run on the Big/Little 2021 fish used Novogene, NovaSeq 6000 PE150

Order Qubit 4 reagents/tubes for P. cod DNA extractions in Newport

1

Probably n=500 broad spectrum - Assay (standards, reagent): Q33266, https://www.thermofisher.com/order/catalog/product/Q33266 - Tubes: https://www.thermofisher.com/order/catalog/product/Q32856?SID=srch-srp-Q32856

Inventory DNeasy extraction kits, order more if needed for P. cod

1

For Pacific cod extractions occurring in January

Hosting Shiny App long-term for paper

2

Has anyone included a direct link to a Shiny App in a published paper, or. say, a link from a GitHub repo release that was referenced in a paper? Basically,...

Build Pacific cod reference SNP panel from WGS data

1

I would like help building a reference SNP panel for pacific cod using the big heatwave genetics dataset (see issue #2232). Panel should be a VCF containing genotypes at biallelic...