Kevin Ying

SNAP seems to put some @RG-\* tags into the alignment section This shouldn't happen for SM and PL tags as they are either not defined or have different meanings. According...

remove SM and PL from tag from every read

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For fixing Issue: Invalid SM tag in sam record #54 Tested and qProfiler no longer errors out. Corrections based on sam file spec: https://samtools.github.io/hts-specs/SAMv1.pdf

question on graph compaction

1

Hi thank you for cuttlefish, I have an output from cuttlefish at k=31 The unitigs don't seem to be maximal, there are multiple unitigs in a row shouldn't they be...