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question on graph compaction

Open kevyin opened this issue 5 years ago • 1 comments

Hi thank you for cuttlefish,

I have an output from cuttlefish at k=31

The unitigs don't seem to be maximal, there are multiple unitigs in a row shouldn't they be joined merged?

cuttlefish_k31

I hope I didnt do something wrong Thanks in advance

kevyin avatar Feb 05 '21 05:02 kevyin

Hi @kevyin, thank you for using cuttlefish! We'll need some more information to look into this. Would it be possible for you to provide the reference data that you had used in this experiment, or any small enough sample where you're observing such a scenario? Besides, please provide the commands that you used here. Also, what tool have you used for the visualization?

jamshed avatar Feb 05 '21 14:02 jamshed