Kemin Zhou

Channel might be mixed

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## Bug report (input channel val field somehow is treated as path) ### Expected behavior and actual behavior (nextflow works with 50 sample, on the 51st sample, it trigger an...

Access the first node, more of a question

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Is there a way to read the head node data? Assuming I have multiple producers pushing to the list, and single consumers pushing to the list. Can the consumer get...

human and plasmids db not downloaded

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kraken-build --standard --db $DBNAME Only build Bacteria and Viruses, plasmids and human are not downloaded. Not sure this is a bug or standard feature. kraken-build --download-library plasmids --db testdb --2016-07-08...

Now I figured it out how to do pull request on git hug. Simple addition to download reference databases.

Possible error

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int tagval=-1; When I use GetTag("NM", tagval); The function is stuck at line: if ( !TagTypeHelper::CanConvertFrom(type) in BamAlignment.h When I looked at the TagData it was like: NMC^AMDZ98T2 const char...

failed to find libmaus2

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I installed libmaus2 in my home directory ~/include/libmaus2 ~/lib$ ls libmaus* libmaus2.a libmaus2.la libmaus2_simd_align_128.so.2 libmaus2_simd_align_256.so.2 libmaus2digests.a libmaus2seqchksumsfactory.a libmaus2_simd_align_128.so.2.0.499 libmaus2_simd_align_256.so.2.0.499 libmaus2digests_sse4.a libmaus2_simd_align_128.a libmaus2_simd_align_256.a libmaus2.so libmaus2fftw.a libmaus2_simd_align_128.la libmaus2_simd_align_256.la libmaus2.so.2 libmaus2_irods.a libmaus2_simd_align_128.so libmaus2_simd_align_256.so...

not producing profile result

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I have run the Classify.py program, but it does not produce the profile file which is needed for the next step. I have added the logging utility and trying to...

fixed two compiler errors

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1. setter with const keyword did not pass compiler 2. proper casting of pointer type so that compiler can pass.

When using newer version of compiler of gcc, there is one multi define error, after fixing this compilation is fine. I also fixed a few compiler warnings. There are too...