jwokaty

502 Bad Gateway on long search strings

2

On https://docs.djangoproject.com, if I enter a string of at least 1551 characters into the search and hit enter, I get 502 Bad Gateway Nginx.

Update to recommend .Rmd over .Rnw

1

Update to recommend .Rmd over .Rnw https://bioconductor.org/developers/package-guidelines/#vignettes

Move dependencies out of Dockerfile

9

This PR creates Ubuntu-files to track docker-specific dependencies and skip dependencies that we don't want installed from BBS. Regarding `libmariadb-dev-compat`, I've put it in `apt_required.txt` but commented it out because...

pip install `leidenalg` for Bioc scBubbletree as in https://github.com/Bioconductor/BBS/issues/204. It's about 1.3MB

Pip install torch

3

We `pip` installed `torch` for the package Bioc ASL. See https://github.com/Bioconductor/BBS/pull/143. You should install this in the docker if it's not already installed.

Make pip requirements file to version Python packages and better control behavior.

bedbaser

15

Update the following URL to point to the GitHub repository of the package you wish to submit to _Bioconductor_ - Repository: https://github.com/waldronlab/bedbaser Confirm the following by editing each check box...

Update config.yaml for 3.21

1

For after the release

Can basilisk remove its old cache if a new version is available?

2

The basilisk cache can grow quite large. Is there a way that basilisk can remove the old cache before it creates a new cache for a new version of basilisk?