Jack Wimberley

tabix returns row from VCF file multiple times

4

Using tabix version 1.9 on CentOS 7 I am querying a public indexed dataset (gnomad annotations from the Broad institute) using tabix together with a regions file in BED format,...

Client library occasionally not found

7

I am running a daemon process in CentOS 7, using R 3.6.0 and callr 3.7.3. The daemon listens to requests and runs a background session via callr, but occasionally this...

I'm finding a difference in behavior between `req_perform` and `req_perform_stream` when it comes to capturing HTTP errors and translating them to R errors, and moreover in capturing 4xx response bodies....

inner join involving hive-partitioned parquet dataset and filters on LHS and RHS causes panic

11

### Describe the bug I am attempting to optimize an inner join on two hive-partitioned parquet datasets `lhs` and `rhs`, joined on one column `join_col`. In a base working query,...

pkgdown::deploy_to_branch creates malformed URLs

1

The function `pkgdown::deploy_to_branch` modifes the URL provided by the user by extending it by the specified build subdirectory: https://github.com/r-lib/pkgdown/blob/c40ba2c989e786bbb2829b431114d26375bbe19a/R/deploy-site.R#L147-L149 When the URL starts with a protocol, as it should, the...