James Wasmuth

printing duplicate (I think) lines

1

Hi, I'm using graphmap (0.3.1) align with the -Z option and occasionally have duplicated alignment printed twice. I've attached the reference, example reads and the output in sam format. The...

Minimium exon length in 2.3.3

3

Hi, I am using spaln 2.2.3. I am getting some alignments with exons of length

sortgrcd is only reporting one alignment

1

Hi, I am using sortgrcd v2.1. I am finding potentially strange behaviour when I output in any of the newly supported formats (-O 3, 6, 7, 8). If more than...

Unknown amino acid [-]

9

When "--showalignment yes" I continually get "*\* FATAL ERROR **: Unknown amino acid [-]". When "--showalignment no" it's fine. Is this a problem with the gap symbol? Thanks