Tsung-Yu Lu

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icon company @ChaissonLab icon location Los Angeles, CA icon location Computational biology postdoc in @mchaisso 's lab at the University of Southern California.

Results 1 issues of Tsung-Yu Lu

suboptimal alignment in endsfree mode when match score != 0

2 comment

Hi, I notice that the program can return a suboptimal alignment in endsfree mode when match score != 0. Given a pattern (sequencing read) `GGGGCGCGTCGGGCTCCGGGTGTGGGGGGGGTGTGGGGGGGGGGGGTGGTGTGTGGGGGTGTGGCTGGTGAATGGGGTGAGGGTGGTGAGTGGAGTGAGGGTGGTGAGTGGGGTGAGGGTGGTGAATGGGGTGAGGGTGGTGAGTGGGGT`, and text (repetitive DNA in...