Tsung-Yu Lu

Hi Lee, Could you trying using the latest commit? The `preMBE.py` is obsolete and not used in the current pipeline. Cheers, -Tony

Hi Lee, Thanks for reporting this error. I just removed the strict dependency for `module`. It will now invoke `module` only when your system supports it. Let me know if...

Fixed again! Forgot to make sure return code is zero. Hope it works now.

Hi @Xgiintghhuabi302 and @jingydz, Thanks for reaching out. I've just fixed the bug in the latest commit 4b64113de14d63a012b0c415a0255ccdd330488e. The reason is that `genPanKmers` did not write kmer names but `ktools...

Hi Huiying, Could you pull the latest version and see if it works? The pruning step should be off this time. Thanks, -Tony

Hi, Thanks for reaching out. I've added an automated bias correction tool `danbing-tk-pred` in v.1.3.2 that uses the approach detailed in the [latest manuscript](https://genome.cshlp.org/content/33/4/511). The previous LSB table is obsolete....

Hi Joseph, Thanks for posting the question. We're working on creating a new repo to release scripts used in the HPRC paper. I will point you to the repo once...

Another note, I tried using match score=0 with `WFAlignerGapAffine aligner(0,4,6,2,WFAligner::Alignment,WFAligner::MemoryHigh);` for the above example, but the program didn't return any reasonable alignment and just aligned pattern to the end of...