Joachim Wolff

## Expected Behavior Little to no CPU usage doing nothing with Gephi, and same memory usage. Freeing memory sometimes. ## Current Behavior Even if Gephi is in the background (aka...

Hi Ricardo, Thank you for providing such an awesome template! I will use it in my dissertation :) I have one small issue regarding the space between the text end...

* [ ] Flake8 passes (`flake8 . --exclude=.venv,.build,planemo_test_env,build --ignore=E501,F403,E402,F999,F405,E712`) * [ ] Local tests pass (`py.test hicexplorer --doctest-modules`)

Python changed in version 3.8 for macOS the start method from 'fork' to 'spawn', because fork is considered as unsafe. However, our usage of multiprocessing leads to crashes with the...

Restriction enzyme resolution crashes for fetch

1

Hi Nezar, I have created a cool matrix based on a restriction cut site resolution. If I try to load data via ``` cool_obj.matrix(sparse=True, as_pixels=False).fetch('chr1') ``` it is crashing. The...

Check UCSC / ensebl notation

4

If you load `cooler_file.matrix(balance=False, sparse=True).fetch(chrom)` but you do not know if the cooler file you are opening contains UCSC or ensebl annotated chromosomes, it crashes if you pick the wrong...

region per track instead of global definition

1

Hi, an option to use one region per track. Instead of `--region chr1:1-5` this could be placed a) as `region=chr1:1-5` as a part of the track definition or b) that...

Hi, awesome package you provide here. I wonder if you also provide a conda package? Thanks and best, Joachim

Galaxy wrapper

1

Hi, great tool! Is for this tool a galaxy integration available? Thanks and best, Joachim