Joachim Wolff

Results 98 comments of Joachim Wolff

Officially support arm64 architecture

Any progress on this issue? Using the recommended Adoptium JDK version 11 but as aarch64 instead x64 leads to a much smoother Gephi experience, however, it does not display the...

can't use hicDetectLoops

Seems that a dependency changed its API. Please try to install HiCExplorer with a fixed version number for this dependency: `conda install hicexplorer cleanlab=0.1 -c bioconda -c conda-forge` Best, Joachim

Having Issues using HiCExplorer with .hic files generated from Juicer v2.0

We use hic2cool. Must be fixed there.

hicAggregateContacts --mode inter-chr issue

Please use a recent Python version like 3.6, 3.7 or 3.8. We dropped the support for Python 2.7 two or three years ago. Maybe that is the reason for your...

hicAggregateContacts --mode inter-chr issue

@LeilyR Can you have a look at this issue?

Hicexplorer with Micro-C analysis

Maybe we can integrate it in a future release. However, don't expect a new release soon.

How to use hicConvertFormat to get HicPro format file

You are missing the BED file!

hicPCA and compartmentalization. Setting interaction range.

Hi Jun, so you basically need a `--maximalRegion` parameter that considers only the interactions for this genomic distance? I need to check the source and the mathematical properties to see...

hicPCA and compartmentalization. Setting interaction range.

Thanks for your contribution, but I don't get your point. A different input will lead to a different result, that's quite clear. However, even if the result is not 1:1...

HiCBrowser Compatibility

@LeilyR That's something MPI needs to answer.