jlac

Conflicting annotation

1

In running SuperFreq on a few immunotherapy tumors, I noticed that a recurring mutation in a gene of particular interest (B2M) that ablates a start codon is actually getting annotated...

SIGSEGV: Illegal storage access. (Attempt to read from nil?) during Somalier relate

10

I am running somalier relate to check relationships in a PED file against those predicted from genotype data, and when I run it without providing the PED file, I get...

No genotype calls for well-covered locus

4

Hi, I am trying to genotype TRs at the FXN locus and am getting strange results for some samples where the genotypes are not called at all. I know in...