jlac comments

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                                            jlac

Error during running the recent version

Hi @ChristofferFlensburg, Has there been any progress here? This error is causing consistent issues. Thank you! Justin

Error during running the recent version

Hi @ChristofferFlensburg, Has there been any progress here? This error is causing consistent issues. Thank you! Justin

Incorrect x-axis genomic coordinates in --zoom mode

Any plans for a fix for this? This is a major issue, limiting the utility of this tool. Thank you! Justin

No genotype calls for well-covered locus

Hi, Thank you for the reply! I ran it with the --verbose flag and am not getting the additional DEBUG details you outlined above.

No genotype calls for well-covered locus

That worked! Thank you!

SIGSEGV: Illegal storage access. (Attempt to read from nil?) during Somalier relate

Sorry, I did a poor job explaining myself. It's 5,371 samples and the command is: somalier relate -p cumulative.ped --infer -o pedcheck/test /data/GRIS_NCBR/hgsc_processed/csi_wgs_processing/cumulative_somalier/all_sites/*.somalier The duplicates are not duplicates on lines,...