Jane Hawkey

Would be nice if it ran a check at the start to make sure all dependencies were installed and of the right version (like SRST2 does) - and refused to...

Ability to give RedDog a file containing paths to all reads

1

It would be nice if the pipeline had the ability to take a file containing the paths to all the sequences that need to be run instead of a python...

Biopython complains about the Bio.Alphabet import as this is no longer supported. Biopython says that references to alphabet can generally be removed safely - I have removed the two references...

addition of quinolone antibiotic to ARO drug classes?

2

Hi, For the AMRrules project I am attempting to map the AMRFinderPlus Subclasses onto CARD ARO drugs and drug classes. I've noticed that there isn't an ARO entry for the...