Giulio Ermanno Pibiri
Giulio Ermanno Pibiri
Hi @stefanfred, the size on disk should match that returned by `num_bits()`, i.e., everything that we need to evaluate the function. So you cannot remove the space for the meta...
Hi @stefanfred, perfect, thanks! A little nitpick: why the renaming from `Minimal` to `NeedsFreeArray`? A function by itself does not "need" anything, rather *we* choose to have it minimal or...
Hi Tommi and thank for the suggestion. I agree: if the input is broken, GGCAT should abort the construction (and Fulgor too, in turn). Right now, I don't think there...
Ok, as I thought. I'll leave this issue open anyway as a reminder. thanks!
Hi @karel-brinda and thanks for your kind words on the Fulgor index! I agree that the codebase of Fulgor is changing frequently (for the better, though!) and this might result...
> a bit vector of length m - k + 1 (where m is the query length) that says which k-mers of a query matched in the index and which...
I recently learned ( or, better: @rob-p showed me :) ) how to deploy things on Bioconda. And I did that for [SSHash](https://anaconda.org/bioconda/sshash). We could do the same for Fulgor....
Hi, yes, this can definitely be done with little effort (noting that, however, the teaching period is starting again tomorrow). As Rob mentioned, I would provide this in a more...
Hi @karel-brinda, seems a good idea, but I've never done it before. @rob-p, however, surely knows very well how to do it :)
Thank you @rob-p for the perfect answer to @tbenavi1. I'll just add that you can also inspect your CPU usage using a visual tool such as `htop` from terminal.