Giulio Ermanno Pibiri comments

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                                            Giulio Ermanno Pibiri

different runs return different number of unitigs and distinct color subsets

Yes exactly, both Themisto and Fulgor are correct anyway since the num. of kmers always seem to be correct and consistent. Just letting you know.

different runs return different number of unitigs and distinct color subsets

Hi @Guilucand and thank you for confirming. I do not think it is a hard requirement. Indeed correctness is not impacted if we have some duplicated color. Any thoughts here...

Feature request: creates a distinct color for each sequence in the input file

Hi @Malfoy, yes, this could be done in principle. I have to understand what support (if any) from GGCAT we have for this though. I do not think we are...

Feature request: creates a distinct color for each sequence in the input file

Thanks Jarno for your input. Yes, splitting each file into several sequences would be the way to go but, as you said, looks like an overkill. I think one approach...

Feature request: creates a distinct color for each sequence in the input file

> If the additional metadata results in a final index as efficient as if we had split the original into many files, then this seems like a practical way to...

evaluation depth goes only to min length

You would have an obvious `out of range` error, as you would try to access elements from the smaller lists at positions that do not exist.

undefined reference to `pthread_create'

Did you also notice this @hmusta under gcc-12?

undefined reference to `pthread_create'

Thanks for confirming @hmusta! Perhaps it is an issue of cmake 3.25.

undefined reference to `pthread_create'

Actually yes, I did. I created some new build directories and executed cmake from there. But I could also try to re-clone the entire project from scratch...maybe maybe!

undefined reference to `pthread_create'

No, still getting the same errors: undefined `pthread_create` and `pthread_join`.