Jeongmeani

Hi, i have adjacent normal sample, so i want to check there is tumor in sample. so i try using deTiN, but gatk does not support AllelicCNV. and i try...

what is resolution in cnv?

1

Hi, i'm confused with term 'resolution' in cnv. what does it mean exactly? Jeongmin

Scatter plot seems to have noise

6

Hi, Using cnvkit, i made cnv scatter plot. but the plot is weird like below.  i expected the plot to be more clear in y-axis plot like below ...

Hi, i would use "extract_features" to get RNA stat. after getting count.matrix using StringTie, and use this count matrix. but it returns error > [1] "[INFO]:Features extracted." Error in `[.data.frame`(features_all,...

Hi, these days i analysis methylseq data. and i count bases(C/T, G/A) of target region. but some reads are vanished in output bam file. so i guess, these reads mapped...