gatk except AllelicCNV

[jeongmeani]

Hi,

i have adjacent normal sample, so i want to check there is tumor in sample. so i try using deTiN, but gatk does not support AllelicCNV. and i try to get AllelicCNV tool and it failed.

so how can i run deTiN on this situation?

Best Regards and Happy new year!

Jeongmin