David Peery

Incorporate objects class

1

**Describe your changes** Beginning to change the usage of contours and hierarchy to using the Objects class. **Type of update** * New feature or feature enhancement * Work in progress...

Contributing guide is outdated on testing

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https://plantcv.readthedocs.io/en/stable/CONTRIBUTING/#testing-and-documenting-your-code I believe most of this section is outdated, for example, `tests/tests.py` is now empty and the test data isn't stored in `tests/*data/`. Also, are we still using pytest? I...

**Is your feature request related to a problem? Please describe.** #906 **Describe the solution you'd like** A way to use metadata from a CSV(info about genotype, plant ID, treatment, etc.)...

**Is your feature request related to a problem? Please describe.** Currently, you have to write out a lot in order to create a new Spectral_data object. This can be somewhat...

The hints file is empty when using more data

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Currently, I'm trying to run braker using 12 bam files. When I use the first 6 or the last 6, it works just fine. However, when I use all 12,...