David Peery

icon indicating a website link https://www.linkedin.com/in/david-peery-344882126/

icon company Purdue University icon location West Lafayette, IN icon location Computers + Plants | Purdue Agricultural Engineering PhD Student

Results 3 comments of David Peery

BRAKER2 failing to collect RNA-seq hints (augustus.tmp1.gff, then augustus.hints.gff) during 8-CPU operation

To anyone who had the same error and is looking through the Issues for a solution - I was getting the same error but it was because my .hints files...

BRAKER2 failing to collect RNA-seq hints (augustus.tmp1.gff, then augustus.hints.gff) during 8-CPU operation

So from this post - https://github.com/Gaius-Augustus/BRAKER/issues/44 it looks like BRAKER2 only works with "mappers that produced spliced alignments ... (Bowtie is not made for this.)". I agree that it should...

The hints file is empty when using more data

Also, I had done this on the unmasked genome and it worked just fine but after masking the genome I get this issue