jblich870

Hi @RegnerM2015 and @rcorces, Many thanks for working on this. When I run addPeak2GeneLinks with nperm=10, most of the PermFDR values come out as 0 (appears similar to example above)....

Hi @RegnerM2015, Many thanks for your reply. Do you think then that the PermFDR calculation is not optimal in its current form? As for the EmpFDR values, I just plotted...

@rcorces @jeffmgranja what are your thoughts on the current FDR calculations in addPeak2GeneLinks? Is the multiple testing correction for the current EmpFDR implementation too strict and if so, is there...