Jayaram Radhakrishnan

Downloaded sample sheet from Sequencing -> Runs issues

5

Hi, Below two cases is related to the downloaded sample sheet from Edit Runs 1) In the Edit Runs -> If we download the "Sample sheet -> BCL2FASTQ" excel file,...

Sequencing Runs -> Edit Runs While saving decrements the Start date

5

Hi Team, I'm facing an issue on the miso application plain mode ( docker-compose ) , whenever I trigger the Save button on the Edit Runs page under the Sequencing,...

Jira integration not populating or fetching records

19

Hello, I'm trying to integreate jira via HTTP Basic Auth config. I updated the details over the miso properties file and after restarted the service. By the way I'm currently...

Install v1.0.0 deepmicrobes

7

Describe your pull request here ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add"...

Dram database download issue looking for files with previous datestamps

3

Dear Team, We are facing error with the dram database download issue and getting the traceback ``` File "/scratch/gencore/.eb/2.0/software/dram/1.3.5/bin/DRAM-setup.py", line 158, in args.func(**args_dict) File "/scratch/gencore/.eb/2.0/software/dram/1.3.5/lib/python3.10/site-packages/mag_annotator/database_processing.py", line 374, in prepare_databases db_handler.populate_description_db(output_dbs['description_db_loc'],...

Exception error in v1.48.2 while accessing projects

3

Dear Team, Getting below exception in the logs, certificate manually injected still no luck. When i comment the jira entry in miso.properties files, there are no issues. So suspecting this...

Versioned release package for DeepMicrobes

11

I'm working to make DeepMicrobes available on Bioconda. Please refer. -> https://docs.github.com/en/repositories/releasing-projects-on-github/managing-releases-in-a-repository#creating-a-release I need your help creating a versioned release to use for the Bioconda recipe. Once DeepMicrobes is added...

Bioconda package for kent

4

Hi Team, Kindly advise do you have this kent software available as bioconda package? If not do you have any plans to include? Please let me know Thanks Jay

Error occured while running Busco

3

Hi Kindly advise, we are using conda version of quast 5.0.2 ``` quast -t 28 -f -b -o quast_test -1 ../../R6_read1_trimmomatic_1PE.fastq.gz -2 ../../R6_read2_trimmomatic_2PE.fastq.gz R6_RcB5_frag_pilon.fast 2024-01-29 18:01:54 Running BUSCO... 'BuscoConfig' object...

Extend the character length for Sequence

7

Hello, I'm trying to enter the index(barcodes) on the Index families configuration tab. My barcode size is 33 charcters long and i already excecuted below query on mysql ``` ALTER...