Dram database download issue looking for files with previous datestamps

[jayramr]

Dear Team,

We are facing error with the dram database download issue and getting the traceback

  File "/scratch/gencore/.eb/2.0/software/dram/1.3.5/bin/DRAM-setup.py", line 158, in <module>
    args.func(**args_dict)
  File "/scratch/gencore/.eb/2.0/software/dram/1.3.5/lib/python3.10/site-packages/mag_annotator/database_processing.py", line 374, in prepare_databases
    db_handler.populate_description_db(output_dbs['description_db_loc'], update_config=False)
  File "/scratch/gencore/.eb/2.0/software/dram/1.3.5/lib/python3.10/site-packages/mag_annotator/database_handler.py", line 235, in populate_description_db
    self.add_descriptions_to_database(self.make_header_dict_from_mmseqs_db(self.db_locs['uniref']) ,
  File "/scratch/gencore/.eb/2.0/software/dram/1.3.5/lib/python3.10/site-packages/mag_annotator/database_handler.py", line 155, in make_header_dict_from_mmseqs_db
    mmseqs_headers_handle = open('%s_h' % mmseqs_db, 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/scratch/Reference_Genomes/In_house/Metagenomic/oral_microbiome/dram/uniref90.20220907.mmsdb_h'

Here everytime i need to set the database location path as per the below command.

DRAM-setup.py set_database_locations --uniref_db_loc uniref90.20220907.mmsdb

But this download takes more than 24 hours and on the next day, it is again complains with couldn't find uniref90.20220908.mmsdb. We would request to fix, to update the files in version number instead of datestamps.

I appreciate if you can fix this asap

Regards Jay

[rmFlynn]

I agree that this should be fixed, and I will try to do so

[rmFlynn]

Its going to be a dram 2.0 feature, it looks like.

[jayramr]

Thanks for the update

[rmFlynn]

The update is coming but as usual held up in bioconda

[jayramr]

So this is fixed in v1.4.0 ? if yes please close this ticket

[rmFlynn]

I will once 1.4 reaches bioconda