ivan-mh

Results 6 comments of ivan-mh

Wrong last stable nucleotide for a deletion in GRCh37 to GRCh38 conversion

Hi Liguo, Thank you for your reply and sorry for my previous imprecise description. I think, this is probably a bug in CrossMap, I have found a similar issue for...

Wrong last stable nucleotide for a deletion in GRCh37 to GRCh38 conversion

Hi Liguo, Thank you very much, I am looking forward to the new version. Today, I think I have found another issue: https://github.com/liguowang/CrossMap/issues/47 Best wishes, Ivan

Wrong last stable nucleotide for a deletion in GRCh37 to GRCh38 conversion

Hi Liguo, Thank you very much for releasing CrossMap version 0.6.3. I now run the full test with more than 600 million DBSNP v151 variants. With CrossMap version 0.6.1, I...

Wrong last stable nucleotide for a deletion in GRCh37 to GRCh38 conversion

Hi Liguo, I would like to ask you, whether it is planned to fix the remaining issues described here and in #47 in the near future? I plan to lift...

Wrong last stable nucleotide for a deletion in GRCh37 to GRCh38 conversion

Many Thanks, I am looking forward to the new version

Wrong last stable nucleotide for a deletion in GRCh37 to GRCh38 conversion

Hi Liguo, Thank you for releasing the 0.6.4 CrossMap version. I tested the lift over from GRCh37 to GRCh38 using ensembl chain files with ~660 million DBSNP v151 variants and...