ReporTree

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Updating tree and clusters without complete rerun?

1

Hello, I'm really loving ReporTree. Thank you so much for creating this valuable tool! I am looking to identify genetic clusters from a very large set of Salmonella isolates (>25,000)...

eam12

Just a friendly request to maybe publish this tool as a bioconda package. https://tertiary-workflows-docs.readthedocs.io/en/latest/writing_bioconda_recipes.html This would come with the added advantage of having a bioconda-derived Docker as well as Singularity/Apptainer...

marchoeppner

Docker - Update base container

2

Hi, so I noticed that the Docker build is a tiny bit too minimal for my needs (I need 'ps' to be available); the base container that you guys use...

marchoeppner

RecursionError: maximum recursion depth exceeded while calling a Python object

1

Thanks so much for creating ReporTree! I'm attempting to process a **very** large dataset (~45,000 isolates) using a cgMLST matrix (from chewBBACA) with the `--analysis HC` flag. An error occurred...

eam12

Conda install failure

17

Dear ReporTree Team, I attempted to install ReporTree on a server running Ubuntu 20.04.6 LTS, following the instructions provided in your documentation. Unfortunately, the "pytest" failed. Please find the full...

mpolemis