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RecursionError: maximum recursion depth exceeded while calling a Python object

Open eam12 opened this issue 4 months ago • 1 comments

Thanks so much for creating ReporTree! I'm attempting to process a very large dataset (~45,000 isolates) using a cgMLST matrix (from chewBBACA) with the --analysis HC flag. An error occurred when running partitioning_HC.py during the Generating newick file... step: RecursionError: maximum recursion depth exceeded while calling a Python object. I assume this has something to do with the size of the dataset. Is there any workaround? I have successfully run ReporTree (version 3.1.2) with this same dataset using --method MSTreeV2. Any help would be greatly appreciated!

eam12 avatar Sep 15 '25 19:09 eam12