Ida Lindeman
Ida Lindeman
Did anybody figure out a solution to this issue? I would really like to try scde, but cannot because of this very same issue.
Hi @ibseq , I'm so sorry for the extremely late reply. If you are still interested in getting BraCeR to work, have you tried providing the path to your config...
Hi @ibseq , This seems strange. I'm not sure how much I can help you without more information, perhaps some screenshots? Where is your config file located? Are you specifying...
Hi again, could you please provide me some screenshots of the commands you are using and the resulting error? Without such information it is hard for me to give any...
Hi @Linda-Lan , Did increasing the memory limit solve your issue? Best, Ida
Hi, Could you please send me the references you built as well as the output you got for one cell using your reference as well as using the standard human...
Hi again, and sorry for the late reply. My first guess is that this could have something to do with the igblast auxiliary file. It looks like you did not...
Hi @scharch , Thanks for your feedback. I will look into this issue in the coming days. Did you try creating resources for heavy chain without D sequences, or was...
I see now that the documentation for build was too vague. What I meant was that D sequences were optional in the sense that they are not needed for light...
Hi Alex, As long as your cells are B-lineage cells, this low mapping rate is very strange. It would help me to know a bit more about your dataset and...