Ida Lindeman

icon company University of Oslo icon location Oslo, Norway

Results 15 comments of Ida Lindeman

Low alignment rate for healthy-donor b cells

Hi Alex, Fastq as input and the output directory for a couple of cells would be great. I will then try to run bracer and see if I can figure...

Low alignment rate for healthy-donor b cells

Hi Alex, I have looked at the first two of the cells you sent me. I think there is an issue with the sorted cells - when looking at their...

What is IGHDM subtype?

Hi Sabrina, The IGHDM isotype indicates that the same reconstructed sequence was found in combination with the IGHM and IGHD constant regions. When it comes to differences in C_call and...

Output from fasta submission

Hi @NicolasHipp , Happy new year and thanks for the feedback! Did you run bracer summarise for just the one cell you tested, or for multiple cells?

Memory requirements in Summarise

I would suggest the same as Mike. Do you expect your cells to be highly clonal? This could explain the huge memory use. Unfortunately we have not tested BraCeR on...