Irina Balaur

Incorrect SBGN file format following writing the render information

6

Hello, I am not sure whether this is related to issue #51, but I get an "invalid file format" after writing the render information. The error refers to Please see...

Question on high level validation, ruleId=pd10112: if there are compartments defined, top-level glyphs must have a compartmentRef.

2

The high level validation (using libSBGN 3.0) failed due to not having all top-level glyphs referring to a compartment. Please see the attached files: input SBGN-ML and output validation message....

Given that SbgnUtil.readFromFile can read from both 2.0 and 3.0, but SbgnUtil.writeToFile exports to 3.0 only, I think it would be helpful that libSBGN provides conversion to 2.0 as well...