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Incorrect SBGN file format following writing the render information

Open ibalaur opened this issue 6 years ago • 6 comments

Hello,

I am not sure whether this is related to issue #51, but I get an "invalid file format" after writing the render information. The error refers to <<Attribute "xmlns" was already specified for element "renderInformation".>> Please see the attached simple test case on this. If this is already addressed, could you please create a new jar? Thank you very much.

WriteRenderExtensionExample.java.zip

test-output.sbgn.zip

ibalaur avatar Jul 04 '19 18:07 ibalaur

hello irina,

i do need more information, yes indeed the file that you have attached is invalid and will not be recognized. But I have no idea where this is coming from, as it does not happen on my machine. I will need the following information:

  • JRE / JDK version
  • operating system you are running

and anything else that you could imagine that would help.

best Frank

fbergmann avatar Jul 08 '19 12:07 fbergmann

Hello Frank,

I am using:

  • Mac, OS X El Capitan, (version 10.11.6).
  • jre/jdk 1.8 (also changed manually to 1.6 - same output).
  • eclipse: Version: Oxygen.1a Release (4.7.1a) (not sure if needed);
  • the libSBGN release from: https://github.com/sbgn/libsbgn/releases/tag/milestone3.1. PS: I will do some updates and get back to you on this.

Thank you. Best, Irina

ibalaur avatar Jul 08 '19 19:07 ibalaur

Hello Frank,

Can you please create a new version of the release jar? I think I may not have the lastest updates. Thank you, Irina

ibalaur avatar Jul 08 '19 20:07 ibalaur

I've created a new tag and attached my binaries. The maven build is still running at jitpack at this time (not sure why its taking so long)

fbergmann avatar Jul 09 '19 15:07 fbergmann

Hello Frank,

Many thanks. I tested with the lastest release (https://github.com/sbgn/libsbgn/releases/tag/milestone3.2) and everything seems to work very well. While I think it should be fine, I will do several more tests before closing this issue.

Best regards, Irina

ibalaur avatar Jul 11 '19 10:07 ibalaur

Can this issue be closed?

tczauderna avatar Oct 07 '24 17:10 tczauderna