Jason Stajich
Jason Stajich
https://github.com/nextgenusfs/funannotate/blob/00c207ad4041270a5e0e1f6cff711f697c5d3abc/funannotate/downloads.json#L6 Do we want to try to point to v9? I can update but not sure what else would be broken or if you want to make sure this change...
Could imagine a step which annotated MT with MFAnnot (https://github.com/BFL-lab/Mfannot) and then either used different locus prefix (eg add an M to the locus name), to annotate these. Generally I...
- Add direct links to 2.2.1 release - The example bwa-mem2 run is for the d2 dataset not d3 so indicate that with output file - Add DOI and link...
Need to run autoheader/autoconf on the htslib code as distributed otherwise no 'configure' is available in the folder causing cmake/make of kallisto to fail.
for zenodo it might be good to make a citation link for future releases. needs to be more than just the old paper but all the new contributors? https://github.com/bioperl/bioperl-live/new/master?filename=CITATION.cff https://citation-file-format.github.io/...
This warning has shown up for years -- https://github.com/bioperl/bioperl-live/blob/2b53e22cd3f61961ea9ac7707537a01e4bf75a73/lib/Bio/DB/IndexedBase.pm#L804 I don't remember the exact logic intended but should the return be inside the eval to avoid the ambiguity? Here's my...
Note that the released version link is to a .tar.gz file but it is in fact a .tar file (cannot uncompress it with gzip). https://github.com/hahnlab/CAFE/releases/download/v4.2.1/CAFE-4.2.1.tar.gz
I need to test this first but started a branch for this small fix related to #773
I got this error when running setup: ``` Traceback (most recent call last): File "setup.py", line 5, in long_description = fh.read() UnicodeDecodeError: 'ascii' codec can't decode byte 0xc2 in position...
I think we should have gbk2parts dump the same cds-transcripts.fa files from a gbk file in addition to transcript and proteins file. I am working from sqn and gbk files...