Ricardo H. Ramírez-Gonzalez

biojs-app-*

13

Hi all, I'm wondering, if it makes sense to use the biojs-app-\* prefix to tag stand alone applications that use several biojs modules. A case would be if someone wants...

Deprecation of ```np.long`` in NumPy 1.20 in .merge() method

17

Hi, I'm using ```pyranges-0.0.115``` with ```NumPy-1.22.2``` and ```pandas-1.4.0```. When calling the method range I get the following warning. ``` .venv/lib/python3.9/site-packages/pyranges/methods/merge.py:16: DeprecationWarning: `np.long` is a deprecated alias for `np.compat.long`. To silence...

Samtools 1.x has different options to sort. Right now, the unit test pass, but we need to check all the possible options.

Support for releases without the stable_id tables

1

Hi Jan, I just added code to fix the find_by_stable_id functions and stable_id properties in exon, gene, transcript and translation, to support the changes introduced in schema 65. I ran...

2804 new module kmc

1

## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...