Ricardo H. Ramírez-Gonzalez
Ricardo H. Ramírez-Gonzalez
This seems to be solved by #365
Hi, I'm having the same error, I'm using Daru-0.2.2. Is this something fixed in the master branch? And if so, are you planning to do a release at some point?...
Hi, I'm a bit confused on which version are you trying to compile. I hope I don't have a mess of the configuration files, but you should be testing bio-samtools-2.5.1,...
I usually check that the gem is passing the tests in travis-ci: https://travis-ci.org/helios/bioruby-samtools I'll try to have a look, but I can't promise when, as I have several commitments going...
Thanks for the feedback. We did see the problems with the uri redirection, and it should have been fixed when we updated the code to work with samtools 1.x... I'll...
Hi @jpearl01 , As @danmaclean , we haven't implemented a functionality like this, but I'd been messing a bit with CIGAR lines in other projects, so I may be able...
I got the same issue, I even tried installing explicitly installing version 1.0.0. I tried installing explicitly version 1.0.1, but I got the same error: n87398:public code ramirezr$ biogem fastadb...
So, I'm looking at the code and I could add an option to move the file after the option is set. Which is a bit patchy, but it could work....
samtools generates a default name. It fails when you provide a name, but it generates a bai file, that only has the header, so it wasn't picked up by the...
Hi Mat, Can you provide an example? I am currently updating the gem to samtools-1.3.1 and it is passing the unit test for index_stat