Haoliang Xue

Hi @kamimrcht, Here is the problem I met during Reindeer query: `>AC004707.1-ENST00000511627.contig1 0-54:5,55-66:*,...,429-480:74,481-578:*,579-593:4,594-581:*` The problem occurs at the last triplet, where the starting position 594 is larger than ending position...

Choice of reference and query data sets

1

Hello, Thanks for the nice software. I have 2 data sets A and B annotated separately, and I am using `scArches` for a label transfer analysis from one data set...

Hello, I was attempting to simulate error-free reads with polyester, by using ```simulate_experiment``` function with arguments ```error_model = "uniform"``` and ```error_rate = 0```. But still, when I checked my outputs,...

Error: length of 'dimnames' [2] not equal to array extent

3

Hello, I encountered a problem running SampleQC with `calc_pairwise_mmds`: ```text sample-level parts of SampleQC: calculating 3 sample-sample MMDs: |==========================================================================================================| 100% clustering samples using MMD values calculating MDS embedding Error in...

Hello, I would like to create a k-mer count matrix from a list of fastq files and have some questions please: 1. I noticed in your publication that kmtricks does...