hernandezvargash

Changing y axis limits in plotDMRs

2

Thanks for this useful package, I was wondering if there is a way to override the ylim=(0,1) parameter in the plotDMRs function. I tried a nested function: `plot(plotDMRs(...), ylim=c(0,1))` but...

Hi, Is this package compatible with Seurat v5 objects? If that's the case, which assay and slot should be used in the 'ImportSeuratObject' function? Thanks!

initializeScenic: getDbAnnotations error

7

Hi, I've been using SCENIC's R version in linux environment with success until last week, but now I get an error when trying to initialize (please see below). I used...

--since not working

1

`--since` gives the same result regardless of data or 'yesterday' parameter. future dates are also accepted. Thanks

No gene symbols

3

Thanks for this useful tool. I'm trying to visualize my seurat object. I can see my UMAP plot with the reductions I made in R, however I don't gene symbols...