Watal M. Iwasaki

Add math-block notation

16

As discussed in #189, the following notations are added to math-block notation: ```tex \[ a = \sum \frac 1 i \] \begin{equation} a = \sum \frac 1 i \end{equation} \begin{equation*}...

Support proper notations for math/equations

7

Using `$$ ... $$` for display-style equations is not recommended in LaTeX. Instead, users are supposed to use the following notations: - `\[ ... \]` - `\begin{equation*} ... \end{equation*}` -...

**Is your feature request related to a problem? Please describe.** The desired layout is like this: ``` |--------|--------| | script | | |--------|terminal| | plot | | |--------|--------| ``` AFAIK,...

Bump version. Add keg_only because rmblast conflicts with blast. - [x] Have you followed the [guidelines for contributing](https://github.com/brewsci/homebrew-bio/blob/master/CONTRIBUTING.md)? - [x] Have you checked that there aren't other open [pull requests](https://github.com/brewsci/homebrew-bio/pulls)...

Add cache busting to config.json fetcher

2

**Is your feature request related to a problem? Please describe.** JBrowse sometimes sticks to cached data. It is not easy to refresh track views after updating the underlying data. **Describe...

Embedding react view with a config.json

1

**Is your feature request related to a problem? Please describe.** We can create and modify `config.json` with `@jbrowse/cli`. But it cannot be read by `@jbrowse/react-linear-genome-view`, and we have to prepare...

`set-default-session --tracks` generates incomplete session

13

`set-default-session --tracks` generates tracks with minimal properties: "type" and "configuration": ```json "views": [ { "id": "LinearGenomeView-12", "type": "LinearGenomeView", "tracks": [ { "type": "QuantitativeTrack", "configuration": "monocot" }, { "type": "AlignmentsTrack", "configuration":...

option or envvar to skip LANG='C' check?

3

I have `LANG='C'` in my .Renviron to disable locales, and `testthat::expect_true()` suddenly started blaming it. How can I solve this warning? ``` Warning (test-write.R:5:3): save_as() works Changing language has no...

`auto_unbox=TRUE` in `toJSON()` has been ignored when `dataframe="column"` since 65680f68; therefore it was not possible to unbox single-row data.frames automatically: ```r iris1 = head(iris, 1L) cat(toJSON(iris1, dataframe = "column", auto_unbox...