Hang Su
Hang Su
Hi, Is this interactive graph layout available for Bandage now? Thanks, Hang
I had the same issue, The error message shows as follows: File "/home/suhang/lazyB/LazyB-master/unitig_filter.py", line 16, in illumina_dict = SeqIO.index_db(unitigs + ".idx", unitigs, "fasta") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/linuxbrew/.linuxbrew/Cellar/[email protected]/3.11.2_1/lib/python3.11/site-packages/Bio/SeqIO/__init__.py", line 960, in index_db...
Hi Guillaume, Thanks for your reply! I tried: ` nodes_info = [] for n, data in g.nodes(data=True): num = 0 for c in data['colors']: num += 1 nodes_info.append(["Node", n, "has...
Thank you so much, Guillaume! Will do! Best, Hang
Hi Guillaume, Sorry for the delay of response! I contacted the pyfrost author @lrvdijk and examined different versions of Bifrost and its output graph. Lucas created a test C++ program...
[bifrost_graphs.zip](https://github.com/pmelsted/bifrost/files/13300959/bifrost_graphs.zip) I attached the bifrost graphs here for your reference! Thanks in advance! Hang
Hi Guillaume, Thanks for your reply! Here is the construction command: Bifrost build -t ~{num_threads} -k ~{kmersize} -i -d -c -s ~{sep=" -s " fas} -r ~{ref} -o ~{outputpref}_Bfrost_graph The...
I can work with LRJointCallGVCFs.wdl
Installation command: ``` git clone https://github.com/AlgoLab/RecGraph.git cd RecGraph cargo build --release ``` commandline: `cargo run --release ./example/reads.fa ./example/graph.gfa` Thanks!
That works! Thanks so much!